FEM foundation A: DofKind/DofLayout, shape-function library with Hessians, solvers on DofLayout (#35)

* fem: DofKind/DofLayout and the shape-function library with second derivatives

DofKind (Ux..Rz, T, P), DofSet, ElementDofs (per-node kinds and condensed
internal unknowns) and DofLayout: mesh nodes by label, kinds in order, then
reference points. basis::Basis covers line2/3, tri3/6, quad4/8/9, tet4/10,
wedge6/15, pyramid5, hex8/20/27 with values, first and second natural
derivatives (second-order forward AD, fem::jet) and the physical gradients,
Hessians and Laplacians with the map's second-derivative term. Tested for
Kronecker delta, partition of unity, polynomial completeness, finite
differences, affine and curved maps.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01NmAttHhUZTokgPeEJia8sm

* solver, explicit: number degrees of freedom with DofLayout

The implicit mesh numbers its unknowns with a DofLayout (mesh nodes by label
with the kinds their elements declare, then six per coupled reference point);
assembly adds element blocks by (node, DofKind), so a node may carry any mix
of kinds; couplings, boundary conditions, loads and results address
(node, kind). The explicit system keeps node-major translations, now checked
against its layout (NODE_DOFS). Solid formulations declare their ElementDofs.

Every static, frequency and explicit result of the solver, explicit, engine
and io test suites hashes bit-identically before and after (957 results).
docs/fem.md describes the DOF model and the shape-function conventions.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01NmAttHhUZTokgPeEJia8sm

* fem, solver: simplify after review

Block offsets resolved once per node pair; add_scalar/add_diagonal take
the kinds like add_block; one checked Jacobian inverse (dense::positive_inverse)
for the solid kernels and the basis library; static natural-node tables; the
Hessian path inverts the Jacobian once.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01NmAttHhUZTokgPeEJia8sm

---------

Co-authored-by: jyviko <2501648+jyviko@users.noreply.github.com>
Co-authored-by: Claude Opus 5.5 <noreply@anthropic.com>
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@@ -2,11 +2,12 @@
//! formulations, the coupled reference points, the degrees of freedom, prescribed values and the
//! load vector of a step.
//!
//! Degrees of freedom: three translations per mesh node (nodes by label), then six per coupled
//! reference point (points by name): translations along X, Y, Z and rotations about them.
//! Degrees of freedom ([`DofLayout`]): the kinds each mesh node's elements declare (three
//! translations for solids), nodes by label, then six per coupled reference point (points by
//! name): translations along X, Y, Z and rotations about them.
use modelcraft_fem::element::{Formulation, Solid};
use modelcraft_fem::{Elasticity, elasticity, face};
use modelcraft_fem::{DofKind, DofLayout, DofSet, Elasticity, elasticity, face};
use std::collections::BTreeSet;
use modelcraft_model::{ElementKind, Load, Model, Resolved, SectionKind, Step, Target};
@@ -41,18 +42,18 @@ pub struct Point {
}
/// The analysed mesh: the nodes that carry degrees of freedom (those of the solid elements),
/// sorted by label, the elements sorted by label, and the coupled reference points by name.
/// sorted by label, the elements sorted by label, the coupled reference points by name, and the
/// numbering of their degrees of freedom (mesh node `n` is layout slot `n`, reference point `k`
/// is [`DofLayout::point_slot`]`(k)`).
#[derive(Debug, Clone)]
pub struct Mesh {
pub labels: Vec<u32>,
pub xyz: Vec<[f64; 3]>,
pub elements: Vec<Elem>,
pub points: Vec<Point>,
pub layout: DofLayout,
}
/// The directions of a node's degrees of freedom, 0–5.
const DIRECTIONS: [&str; 6] = ["X", "Y", "Z", "rotation about X", "rotation about Y", "rotation about Z"];
impl Mesh {
pub fn node(&self, label: u32) -> Option<usize> {
self.labels.binary_search(&label).ok()
@@ -66,43 +67,35 @@ impl Mesh {
self.points.binary_search_by(|p| p.name.as_str().cmp(name)).ok()
}
/// The translational degrees of freedom of the mesh nodes.
/// The degrees of freedom of the mesh nodes; the reference points' follow them.
pub fn mesh_dofs(&self) -> usize {
3 * self.labels.len()
self.layout.node_dofs()
}
/// Every degree of freedom: the mesh's, then six per reference point.
/// Every degree of freedom.
pub fn dofs(&self) -> usize {
self.mesh_dofs() + 6 * self.points.len()
self.layout.dofs()
}
/// Degree of freedom `c` (0–5) of reference point `k`.
pub fn point_dof(&self, k: usize, c: usize) -> usize {
self.mesh_dofs() + 6 * k + c
/// The degree of freedom of `kind` at layout slot `slot` (a mesh node or reference point).
pub fn dof(&self, slot: usize, kind: DofKind) -> Result<usize> {
self.layout.dof(slot, kind).ok_or_else(|| Error::Internal(format!("slot {slot} has no {kind:?} degree of freedom")))
}
/// The direction of a degree of freedom: 0–2 translations along X, Y, Z, 3–5 rotations.
pub fn direction(&self, dof: usize) -> usize {
if dof < self.mesh_dofs() { dof % 3 } else { (dof - self.mesh_dofs()) % 6 }
}
/// The first degree of freedom and their count (3 or 6) of a node or coupled reference
/// point label.
pub fn label_dofs(&self, label: u32) -> Option<(usize, usize)> {
match self.node(label) {
Some(n) => Some((3 * n, 3)),
None => self.points.iter().position(|p| p.label == label).map(|k| (self.point_dof(k, 0), 6)),
}
/// The kind of a degree of freedom.
pub fn kind(&self, dof: usize) -> Option<DofKind> {
self.layout.locate(dof).map(|(_, kind)| kind)
}
/// What a degree of freedom is, in the user's terms.
pub fn describe_dof(&self, dof: usize) -> String {
let direction = DIRECTIONS.get(self.direction(dof)).copied().unwrap_or("?");
if dof < self.mesh_dofs() {
format!("node {} in {direction}", self.labels.get(dof / 3).copied().unwrap_or(0))
} else {
let name = self.points.get((dof - self.mesh_dofs()) / 6).map_or("?", |p| p.name.as_str());
format!("reference point `{name}` in {direction}")
let Some((slot, kind)) = self.layout.locate(dof) else { return format!("degree of freedom {dof}") };
match self.labels.get(slot) {
Some(label) => format!("node {label} in {}", kind.describe()),
None => {
let name = self.points.get(slot - self.labels.len()).map_or("?", |p| p.name.as_str());
format!("reference point `{name}` in {}", kind.describe())
}
}
}
@@ -141,7 +134,15 @@ impl Mesh {
Ok(Point { name: name.to_string(), label: p.label, xyz: p.xyz })
})
.collect::<Result<_>>()?;
let dofs = 3 * labels.len() + 6 * points.len();
let mut layout = DofLayout::builder();
for e in &elements {
layout.element(&e.2, e.3.dofs());
}
for p in &points {
layout.point(p.label, DofSet::STRUCTURAL);
}
let layout = layout.build();
let dofs = layout.dofs();
if dofs > max_dofs {
return Err(Error::Limit(format!("the model has {dofs} degrees of freedom; the limit is {max_dofs}")));
}
@@ -149,7 +150,7 @@ impl Mesh {
.iter()
.map(|l| model.node(*l).map(|n| n.xyz).ok_or_else(|| Error::Invalid(format!("node {l} is missing"))))
.collect::<Result<_>>()?;
let mut mesh = Mesh { labels, xyz, elements: Vec::with_capacity(elements.len()), points };
let mut mesh = Mesh { labels, xyz, elements: Vec::with_capacity(elements.len()), points, layout };
for (label, kind, nodes, formulation, d, density) in elements {
let idx: Vec<usize> = nodes.iter().filter_map(|n| mesh.node(*n)).collect();
let exyz: Vec<[f64; 3]> = idx.iter().filter_map(|i| mesh.xyz.get(*i).copied()).collect();
@@ -183,10 +184,10 @@ pub fn prescribed(
.push(format!("boundary condition `{name}` acts on reference point `{rp}`, which no coupling ties to the mesh; it holds nothing"));
continue;
}
for (first, count) in resolved.target_nodes(bc.target()).iter().filter_map(|l| mesh.label_dofs(*l)) {
for dof in 1..=count as u8 {
let Some(v) = bc.value(dof) else { continue };
let index = first + usize::from(dof - 1);
for slot in resolved.target_nodes(bc.target()).iter().filter_map(|l| mesh.layout.slot(*l)) {
for kind in mesh.layout.kinds(slot).iter() {
let Some(v) = bc.value(kind.number()) else { continue };
let index = mesh.dof(slot, kind)?;
if !active.get(index).copied().unwrap_or(false) {
continue;
}
@@ -207,14 +208,27 @@ pub fn prescribed(
Ok(out)
}
fn add(f: &mut [f64], first: usize, v: [f64; 3]) {
for (k, c) in v.iter().enumerate() {
if let Some(x) = f.get_mut(first + k) {
/// Add a vector to the three degrees of freedom `dofs`.
fn add(f: &mut [f64], dofs: [usize; 3], v: [f64; 3]) {
for (d, c) in dofs.iter().zip(v) {
if let Some(x) = f.get_mut(*d) {
*x += c;
}
}
}
/// The translations (or rotations) of layout slot `slot`, if it has them.
fn vector_dofs(mesh: &Mesh, slot: usize, rotation: bool) -> Option<[usize; 3]> {
let kind = |c| if rotation { DofKind::rotation(c) } else { DofKind::translation(c) };
let [a, b, c] = [0, 1, 2].map(|c| kind(c).and_then(|k| mesh.layout.dof(slot, k)));
Some([a?, b?, c?])
}
/// The translations of mesh node `node`.
fn translations(mesh: &Mesh, node: usize) -> Result<[usize; 3]> {
vector_dofs(mesh, node, false).ok_or_else(|| Error::Internal(format!("mesh node {node} has no translations")))
}
/// The load vector of a static step: nodal forces and tractions as the model distributes them,
/// forces and moments on coupled reference points, consistent pressure loads, gravity and body
/// forces.
@@ -230,15 +244,14 @@ pub fn loads(model: &Model, resolved: &Resolved, mesh: &Mesh, step: &Step, activ
return Err(Error::Invalid(format!("load `{name}` acts on reference point `{rp}`, which no coupling ties to the mesh")));
}
// Moments act on the rotations, which only reference points have.
let offset = if matches!(load, Load::Moment { .. }) { 3 } else { 0 };
let rotation = matches!(load, Load::Moment { .. });
for (label, v) in resolved.nodal_loads.get(name).map(Vec::as_slice).unwrap_or_default() {
let (first, count) =
mesh.label_dofs(*label).ok_or_else(|| Error::Invalid(format!("load `{name}`: node {label} belongs to no solid element")))?;
if offset + 3 > count {
return Err(Error::Invalid(format!("moment `{name}`: solid nodes have no rotations; apply it to a coupled reference point")));
}
for (c, x) in v.iter().enumerate() {
let dof = first + offset + c;
let slot =
mesh.layout.slot(*label).ok_or_else(|| Error::Invalid(format!("load `{name}`: node {label} belongs to no solid element")))?;
let dofs = vector_dofs(mesh, slot, rotation).ok_or_else(|| {
Error::Invalid(format!("moment `{name}`: solid nodes have no rotations; apply it to a coupled reference point"))
})?;
for (&dof, x) in dofs.iter().zip(v) {
if *x != 0.0 && !active.get(dof).copied().unwrap_or(false) {
return Err(Error::Invalid(format!(
"load `{name}`: {} is not coupled to the mesh (its coupling leaves that direction free)",
@@ -246,7 +259,7 @@ pub fn loads(model: &Model, resolved: &Resolved, mesh: &Mesh, step: &Step, activ
)));
}
}
add(&mut f, first + offset, *v);
add(&mut f, dofs, *v);
}
}
Load::Pressure { set, magnitude } => {
@@ -262,7 +275,7 @@ pub fn loads(model: &Model, resolved: &Resolved, mesh: &Mesh, step: &Step, activ
let xyz: Vec<[f64; 3]> = idx.iter().filter_map(|i| mesh.xyz.get(*i).copied()).collect();
let forces = face::pressure(&xyz, *magnitude).map_err(|e| Error::element(fc.element, e))?;
for (i, v) in idx.iter().zip(forces) {
add(&mut f, 3 * i, v);
add(&mut f, translations(mesh, *i)?, v);
}
}
}
@@ -273,13 +286,13 @@ pub fn loads(model: &Model, resolved: &Resolved, mesh: &Mesh, step: &Step, activ
continue;
}
let rho = e.density.ok_or_else(|| Error::Invalid(format!("load `{name}`: element {} has no density", e.label)))?;
body(&mut f, e, acceleration.map(|a| rho * a))?;
body(&mut f, mesh, e, acceleration.map(|a| rho * a))?;
}
}
Load::BodyForce { set, vector } => {
for label in resolved.sets.get(set).map(|r| r.elements.as_slice()).unwrap_or_default() {
let e = mesh.element(*label).ok_or_else(|| Error::Invalid(format!("load `{name}`: element {label} is not a solid element")))?;
body(&mut f, e, *vector)?;
body(&mut f, mesh, e, *vector)?;
}
}
}
@@ -287,10 +300,10 @@ pub fn loads(model: &Model, resolved: &Resolved, mesh: &Mesh, step: &Step, activ
Ok(f)
}
fn body(f: &mut [f64], e: &Elem, b: [f64; 3]) -> Result<()> {
fn body(f: &mut [f64], mesh: &Mesh, e: &Elem, b: [f64; 3]) -> Result<()> {
let forces = e.solid()?.body_force(b).map_err(|err| Error::element(e.label, err))?;
for (node, v) in e.nodes.iter().zip(forces) {
add(f, 3 * node, v);
add(f, translations(mesh, *node)?, v);
}
Ok(())
}